Fhir Gpt

Simple proof of concept enrichting FHIR bundles of medical data with prompt generated summary. Demo.

Backend

Mini FHIR server with completions. Serves resources from database folder to request with browser, curl, frontend, etc.

  cd src
  go run serve.go ../database
  wget -O - http://localhost/fhir/Patient/nl-core-Patient-01?_summary=true&_include=AllergyIntolerance,EpisodeOfCare


  Starting FHIR server on localhost:80. Database: ../database
  [7.71s]  Request for /fhir/Patient/nl-core-Patient-01 returned 4 resources with summary.
  [1.59ms] Request for /fhir/Patient/nl-core-Patient-01 returned 1 resources.
  [8.25ms] Request for /fhir/Patient returned 8 resources without summary.

Frontend

Mini Svelte frontend, viewing the resources fetched, including summary.

cd src/frontend
npm i
npm run dev

Open http://localhost:8080 in browser:

Output

Example FHIR bundle, with generated summary as custom resource:

{
  "resourceType": "Bundle",
  "entry": [
    {
      "resource": {
        "id": "nl-core-Patient-01",
        "resourceType": "Patient",
        "birthDate": "1934-04-28",
        "deceasedBoolean": false,
        ...
      }
    },
    {
      "resource": {
        "id": "nl-core-EpisodeOfCare-01",
        "resourceType": "EpisodeOfCare",
        "diagnosis": [
          {
            "condition": {
              "display": "Problem, type: Klinische bevinding",
              "reference": "Condition/nl-core-EpisodeOfCare-01-Condition-01",
              "type": "Condition"
            }
          }
        ],
        ...
    },
    {
      "resource": {
        "id": "nl-core-AllergyIntolerance-02",
        "resourceType": "AllergyIntolerance",
        "criticality": "high",
        "lastOccurrence": "1998-06-02",
        "onsetDateTime": "1995-01-01",
        "reaction": [ ... ],
      }
    },
    {
      "resource": {
        "author": "GPT",
        "date": "2024-09-01",
        "resourceType": "Summary",
        "subject": "Patient/nl-core-Patient-01",
        "text": "The patient has an active episode of care for poorly controlled diabetes mellitus with a risk of hypoglycemia. It is advised not to tightly regulate insulin."
      }
    },
  ]
}